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ChkDsk Runs On Every StartUp.
If your chkdsk runs on every boot, here are some things you can try. First of all, let it run once completely.
 
Then try this :
Run regedit
Edit: HKEY_LOCAL_MACHINE\SYSTEM\ CurrentControlSet\ Control\ Session Manager
Change the BootExecute entry from:
autocheck autochk * /.
To:
autocheck autochk *
 
 
Or else try this :
Start> Run> bring up a command prompt by typing in "CMD" and type " fsutil dirty query g: ". This queries the drive, and more than likely it will tell you that it is dirty. Next, type "CHKNTFS /X G:". The X tells Windows to NOT check that particular drive (G) on the next reboot. At this time, manually reboot your computer, it should not do a Chkdsk and take you directly to Windows.
 
Once Windows has fully loaded, bring up another CMD prompt and type and now you want to do a Chkdsk manually by typing "Chkdsk /f /r g:". This should take you through 5 stages of the scan and will unset that dirty bit. Finally, type "fsutil dirty query g:" and Windows will confirm that the dirty bit is not set on that drive.

 

You can run the chkdsk /r command or the chkdsk /f command to check a hard disk for errors. But if The "chkdsk /r" command and the "chkdsk /f" command take a long time to run on a Windows Vista-based computer see this KB943974 Article.
 
You may also want to check out Understanding The "Other" Version of Windows Vista Chkdsk Utility or ChkDsk Runs On Every StartUp
 
These Links may Interest You:
How To set File Associations in Vista !
How To Retain Transperancy even after maximizing a window.
 
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